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Diphtheroids
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Corynebacterium also called:
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S. pyogenes, beta hemolytic strep group C/G, Arcanobacterium haemolyticum
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Common pathogens (upper respiratory tract)
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E. coli, S. agalactiae, L. monocytogenes, S./K. pneumoniae, S. aureus, S. pyogenes
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Common pathogens (lower respiratory tract)
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S. aureus
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Common pathogens (skin):
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N. gonorrhoeae, Chlamydia trachomatis, yeast, Trichomonas (S. agalactiae/Listeria monocytogenes through birth canal)
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Common pathogens (reproductive tract)
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E. coli, S. aureus
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Common pathogens (blood):
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Micrococci
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Bright yellow, oxidizes but does not ferment glucose (so it doesn't produce acid on Mannitol salt agar—not yellow)
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S. bovis
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-Primary isolates of the viridans strep group
-Causes endocarditis/bacteremia
-May be associated with colon cancer
-Causes endocarditis/bacteremia
-May be associated with colon cancer
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S. pneumoniae
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-Susceptible to optochin (>=14mm)
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S. saprophyticus
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Resistant to novobiocin (<=16mm)
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S. pyogenes
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Susceptible to bacitracin (>10mm)
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Bacitracin susceptibility/PYR pos.
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How do you identify S. pyogenes (group A)?
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Hippurate hydrolysis/CAMP pos.
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How do you identify S. agalactiae (group b)?
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Arcanobacterium haemolyticum
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-Hemolytic, colony resembles beta strep
-Cause of pharyngitis (sore throat) in up to 2.5% of cases
-Cause of pharyngitis (sore throat) in up to 2.5% of cases
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Enterococcus
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-PYR pos.
-Bile esculin pos.
-Growth in 6.5% NaCl broth
-More antibiotic resistance
-Bile esculin pos.
-Growth in 6.5% NaCl broth
-More antibiotic resistance
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Abiotrophia/Granulicatella
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-Nutritionally variant
-May not grow unless you supply pyridoxal (B6), which can be easily achieved by satelliting it around Staph
-May not grow unless you supply pyridoxal (B6), which can be easily achieved by satelliting it around Staph
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N. meningitidis
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Grows as well on blood agar as it does on CHOC!
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Veillonella
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Only anaerobic GNC in humans
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Moraxella cartarrhalis
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-Hockey puck
-Oxidase pos/beta-lactamase pos
-Butyrate pos
-DNAse/nitrate pos
-Oxidase pos/beta-lactamase pos
-Butyrate pos
-DNAse/nitrate pos
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Acinetobacter baumanii
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-Tend to resist alcohol decolorization (so may be mistaken for GPC/CPB or Neisseria)
-One of the major hospital-acquired MDRO's (Multiple-Drug-Resistant Organisms)
-One of the major hospital-acquired MDRO's (Multiple-Drug-Resistant Organisms)
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Bacillus anthracis
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-Gamma, non-motile
-MUST rule out as it can be used as a weapon of mass destruction (WMD)
-You can rule it out if motile/hemolytic
-MUST rule out as it can be used as a weapon of mass destruction (WMD)
-You can rule it out if motile/hemolytic
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Corynebacterium jeikium
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Resistant to many antibiotics, sometimes to all but Vancomycin (this makes it very difficult to treat)
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Listeria monocytogenes
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-Tumbling motility, "umbrella" in medium
-Esculin hydrolysis pos
-Causes neonatal meningitis/stillbirth and food poisoning
-Esculin hydrolysis pos
-Causes neonatal meningitis/stillbirth and food poisoning
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Erysipelothrix rhusiopathiae
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-Infects mostly fish handlers, farmers, slaughterhouse workers, veterinarians (animal pathogen)
-Causes erysipeloid (mild skin disease) and rarely sepsis
-Produces H2S in TSI, nonmotile GPRs
-Causes erysipeloid (mild skin disease) and rarely sepsis
-Produces H2S in TSI, nonmotile GPRs
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Klebsiella pneumoniae
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Indole neg, to differentiate from E. coli
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Klebsiella oxytoca
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Indole pos
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ONPG
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Delayed lactose fermentation
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Yersinia pestis
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-RATS
-Grows slowly, "fried egg" appearance
-Causes plague
-safety pins
-Grows slowly, "fried egg" appearance
-Causes plague
-safety pins
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Plesiomonas shigelloides
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Only oxidase positive member of Enterobacteriaceae
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Vibrio cholerae
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-Yellow on TCBS (sucrose fermenter)
-Has caused pandemics
-Very high mortality rate if untreated but low if properly treated
-Has caused pandemics
-Very high mortality rate if untreated but low if properly treated
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Vibrio
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Tolerate high salt concentrations (all except V. cholerae require added salt in media for isolation)
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Vibrio vulnificus/Vibrio parahaemolyticus
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Green on TCBS (sucrose nonfermenter)
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Pseudomonas aeruginosa
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Grows at 42 degrees Celsius
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Pseudomonas aeruginosa/Burkholderia cepacia
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Common in cystic fibrosis patients
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Pseudomonas fluorescens
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Will not grow at 42 degrees Celsius
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Haemophilus influenzae
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Growth around XV disk
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Haemophilus parainfluenzae
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Growth around V/XV disks
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Bordetella pertussis
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-Causes whooping cough
-PCR more sensitive (don't culture for it)
-PCR more sensitive (don't culture for it)
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Capnocytophaga
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-Fastidious, requires blood agar
-REQUIRES INCREASED CO2
-Animal bite wounds
-REQUIRES INCREASED CO2
-Animal bite wounds
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Clostridium perfringens
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Double zone of beta-hemolysis
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Actinomyces israelii
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-Actinomycosis (lumpy jaw)
-Abscesses of mouth/adjoining areas
-Abscesses of mouth/adjoining areas
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Cutibacterium (Propionibacterium) acnes
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-Normal skin flora
-Frequent contaminant of blood cultures
-Can cause bacteremia/endocarditis
-Frequent contaminant of blood cultures
-Can cause bacteremia/endocarditis
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Bacteroides fragilis
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-Most frequent cause of anaerobic infection
-Very resistant to antibiotics
-Black on BBE, resistant to bile
-Very resistant to antibiotics
-Black on BBE, resistant to bile
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Prevotella melaninogenicus
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-Black on blood agar/LKV due to black pigment
-Sensitive to bile
-Fluorescent brick red
-Sensitive to bile
-Fluorescent brick red
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Porphyromonas
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-Only anaerobic GNR sensitive to vancomycin
-Fluorescent brick red
-Fluorescent brick red
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Fusobacterium necrophorum
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Most frequent cause of sore throat in adults:
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Porphyromonas
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Sensitive to vancomycin and bile
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Bacteroides fragilis
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Resistant to vancomycin, kanamycin, colistin, bile
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Prevotella
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Sensitive to bile/variable with colistin
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Fusobacterium
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Sensitive to kanamycin and colistin
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Proteins that make up the organism
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Mass spectrometry relies on identification of the:
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Time of flight
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The time taken for positive ions to reach the detector (depends on their mass to charge ratio)
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Shigella/Klebsiella
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Non-motile Enterobacteriaceae:
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Gas gangrene
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Clostridium perfringens is associated with what?
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Coryne jeikeium
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Resistant to everything except Vancomycin
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Fusobacterium nucleatum
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Organism is sensitive to kanamycin/colistin, indole positive, has tapered ends. What is it?
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Hemin and Vitamin K
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Thioglycollate broth is supplemented with?
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Propionibacterium acnes
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Organism that is anaerobic, gram pos, catalase and indole pos, nitrite. What is it?
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Peptostreptococcus
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Sensitive to SPS:
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Not on a female
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You have GN diplococci isolated from urethral discharge. Can you diagnose gonorrhea?
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Reagan-Lowe and Bordet-Gengou
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What agar is used for B. pertussis?
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Acinetobacter baumanii
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You have a non-fermentive GNR that is oxidase neg/non-motile/lysine neg. What is it?
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Klebsiella oxytoca
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You have a lactose/glucose fermenting GNR that is non-motile,oxidase/H2S/ornithine neg, citrate/indole/lysine pos. What is it?
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Spot indole
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You have a GNR you suspect is E. coli. What test should be done to confirm?
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Erysipelothrix rhusiopathiae
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Produces H2S in TSI:
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Group A strep
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NO sensitivity testing is done on this group of strep because of penicillin:
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Pasteurella multocida
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You have a GN coccobacilli rod that is catalase/indole/oxidase pos and does not grow on Maconkey. What is it?
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Tube coagulase
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Performed after slide coagulase in identification of S. aureus
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Microdase pos/glucose fermenter
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How do you differentiate Micrococcus from Staphylococcus?
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Aeromonas
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ONPG and oxidase pos:
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Haemophilus influenzae
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An unvaccinated baby has tiny colonies in their CSF. What is causing this?
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MALDI-TOF
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Assists in desorption and ionization